Hapmap

Note: The strand information in hapmap files depends on the version you downloaded. Consult Hapmap READ-ME files here on this subject.



















Example of a Hapmap forward located genotype file of chromosome 22:

rs# SNPalleles chrom pos strand genome_build center protLSID assayLSID panelLSID QC_code NA06985 NA06991 NA06993 NA06994 NA07000 NA07019 NA07022
rs11089130 C/G chr22 14431347 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.7590602:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ GG CG NN CG GG GG GG
rs738829 A/G chr22 14432618 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.7853638:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ GG GG GG GG GG AG AG
rs7510853 A/C chr22 14432918 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.5566121:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ CC CC CC CC CC CC CC
rs10154488 C/G chr22 14433591 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.5588639:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ CC CC CC CC CC CC CC
rs915674 A/G chr22 14433624 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.6201814:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ AG GG GG AG GG AG AG
rs915675 A/C chr22 14433659 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.102004:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ AC CC CC CC NN AC AC
rs915677 A/G chr22 14433758 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.8188880:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ GG GG GG AG GG GG GG
rs9604721 C/T chr22 14434713 + ncbi_b36 perlegen urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2 urn:lsid:perlegen.hapmap.org:Assay:25760.4763957:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ CC CC CC CT CC CC CC
rs2844884 C/T chr22 14434719 + ncbi_b36 affymetrix urn:LSID:bcm.hapmap.org:Protocol:genotype_0002:1 urn:LSID:bcm.hapmap.org:Assay:287867:1 urn:lsid:dcc.hapmap.org:Panel:CEPH-30-trios:1 QC+ CC NN CC CC CC CC CC