HGDP1

Supplement 1 Genotypes

These genotypes are divided up by chromosomes and can be downloaded here from the CEPHB site.
Sample affection and other info has to be delivered through GWASpi’s Sample Info file

Excerpt of a genotype file from a chromosome form the HGDP supplement 1 ftp:
Column headers are the Sample IDs, first column contains Marker IDs.
HGDP00448 HGDP00479 HGDP00985 HGDP01094 HGDP00982 HGDP00911
rs5939319 GG GG GG GG GG GG
rs5982868 TT TT TT TT CC TT
rs11152550 AA AA AA AA AA AA
rs2228433 CC CC CC CC CC CC
rs2228431 TT TT TT TT TT CC
rs3747393 CC CC CC TT CC TT
rs3747394 GG GG GG GG GG AA
rs5982926 AA GG GG AA GG AA
rs936050 AA AA AA AA GG AA
rs1377999 AA AA AA AA AA AA
Excerpt of a marker mapping form the HGDP supplement 1 ftp:
Columns are Marker ID, Chromosome, Position
rs5939319 10 2710157
rs5982868 10 2742096
rs11152550 10 2787560
rs2228433 10 2835363
rs2228431 10 2835403
rs3747393 10 2857017
rs3747394 10 2857133
rs5982926 10 2860901
rs936050 10 3022405
rs1377999 10 3035174